[Biopython-dev] Biopython 1.70 release

Tue Jul 11 09:21:03 UTC 2017

Great - I'll delay the PyPI upload and announcement until
at least one person confirms the zip/tar-ball works for an
install from source.

Thanks,

Peter

On Tue, Jul 11, 2017 at 9:06 AM, Mateusz Korycinski <
mkorycinski at protonmail.ch> wrote:

> Hi,
>
> I can also test that on both Mac and Linux.
>
> Best regards,
> Mateusz Korycinski
>
> Sent with ProtonMail <https://protonmail.com> Secure Email.
>
> -------- Original Message --------
> Subject: Re: [Biopython-dev] Biopython 1.70 release
> Local Time: July 10, 2017 6:56 PM
> UTC Time: July 10, 2017 4:56 PM
> From: p.j.a.cock at googlemail.com
> To: Sourav Singh <ssouravsingh12 at gmail.com>
> Biopython-Dev Mailing List <biopython-dev at mailman.open-bio.org>
>
> Thanks for the offer Sourav, but Ben Fulton is happy to do
> the Windows installers again for Biopython 1.70.
>
> It would however be great if you could download the zip file
> (or tar-ball), and attempt to installing it from source and run
> the tests (on Windows, Linux or Mac).
>
> e.g.
>
> wget http://biopython.org/DIST/biopython-1.70.zip
> unzip biopython-1.70.zip
> cd biopython-1.70
> pip install .
> cd Tests
> python run_tests.py
>
> Thanks,
>
> Peter
>
> On Mon, Jul 10, 2017 at 5:47 PM, Sourav Singh <ssouravsingh12 at gmail.com>
> wrote:
>
>> Hello,
>>
>> I can help with the testing of the gzipped code and creation of Windows
>> installers for Biopython 1.70.
>>
>> Regards,
>>
>> Sourav
>>
>> On Jul 10, 2017 9:59 PM, "Peter Cock" <p.j.a.cock at googlemail.com> wrote:
>>
>>> Hi Ben,
>>>
>>> While in the not too distant future I am hoping to adopt the
>>> NumPy approach to building wheels (and installers?) [1],
>>> it would be much appreciated if you could make all the
>>> Windows installers for Biopython 1.70.
>>>
>>> (In particular Python 3.6, but if possible also Python 2.7,
>>> 3.4 and 3.5 - we no longer support Python 3.3)
>>>
>>> Now that we have Windows-based continuous integration
>>> up and running on AppVeyor [2], I didn't feel it necessary
>>> to bother you in advance about running the unit tests.
>>>
>>> Much obliged,
>>>
>>> Peter
>>>
>>> [1] http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jul
>>> y/021817.html
>>>
>>> [2] http://mailman.open-bio.org/pipermail/biopython-dev/2017-Jun
>>> e/021797.html
>>> https://ci.appveyor.com/project/biopython/biopython/history
>>>
>>>
>>> On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <p.j.a.cock at googlemail.com>
>>> wrote:
>>> > Hello all,
>>> >
>>> > I'd like to delay the PyPI upload and official release announcement
>>> until
>>> > someone else has confirmed they could install this - any volunteers?
>>> >
>>> > http://biopython.org/DIST/biopython-1.70.tar.gz
>>> > http://biopython.org/DIST/biopython-1.70.zip
>>> > Checksums:
>>> >
>>> > $ md5sum biopython-1.70.*
>>> > feff7a3e2777e43f9b13039b344e06ff  biopython-1.70.tar.gz
>>> > 6307ab27c257fe69b9dae4bfc3052f49  biopython-1.70.zip
>>> >
>>> > $ sha256sum biopython-1.70.*
>>> > 4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b
>>> > biopython-1.70.tar.gz
>>> > 34312ce899f6c3fc9dea77ca997f9a8c228043d05284a0653577594aeb119d4f
>>> > biopython-1.70.zip
>>> >
>>> > These are from this tagged commit on the main repository:
>>> >
>>> > https://github.com/biopython/biopython/tree/biopython-170
>>> > https://github.com/biopython/biopython/commit/4d01a84f0aa8f9
>>> 1863075f7f0f074b4b69e53959
>>> >
>>> > The revised documentation is already live:
>>> >
>>> > http://biopython.org/DIST/docs/api/
>>> > http://biopython.org/DIST/docs/tutorial/Tutorial.pdf
>>> > http://biopython.org/DIST/docs/tutorial/Tutorial.html
>>> > etc
>>> >
>>> > Peter
>>> >
>>> > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock <p.j.a.cock at googlemail.com>
>>> wrote:
>>> >> Thanks everyone who helped recently with resolving
>>> >> open issues and pull requests - especially Eric who
>>> >> did lots last week.
>>> >>
>>> >> I'm going to try the release this afternoon, so please
>>> >> consider the mast branch frozen for the time being.
>>> >>
>>> >> Thanks,
>>> >>
>>> >> Peter
>>> _______________________________________________
>>> Biopython-dev mailing list
>>> Biopython-dev at mailman.open-bio.org
>>> http://mailman.open-bio.org/mailman/listinfo/biopython-dev
>>>
>>
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