[Biopython-dev] [Biopython (old issues only) - Bug #2375] (Closed) Coalescent support through Simcoal2

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Wed Nov 9 18:30:31 UTC 2016

Issue #2375 has been updated by Vincent Davis.

Description updated
Status changed from New to Closed
Assignee changed from Biopython Dev Mailing List to Vincent Davis
% Done changed from 0 to 100

Since this is being deprecated, I will just close this.
"Bio.PopGen.SimCoal has been deprecated, and we intend to "
              " remove it in a future release of Biopython. If you would like"
              " to continue using it, please contact the Biopython developers"
              " via the mailing list."

Bug #2375: Coalescent support through Simcoal2

* Author: Tiago Antao
* Status: Closed
* Priority: Normal
* Assignee: Vincent Davis
* Category: Main Distribution
* Target version: Not Applicable
* URL: 
Implement Coalescent support through Simcoal2.

Coalescent simulation support will be included not by creating a new coalescent simulator, but by using the existing Simcoal2.

This will include the ability to run and control Simcoal2 as well as other utilities like scenario generation (both demographies and genomes).

setup.py.diff (271 Bytes)
simcoaldiff.zip (6.07 KB)
setup.py.diff (1.37 KB)

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