[Biopython-dev] [Biopython (old issues only) - Bug #2759] (Resolved) Unit test for Bio.PDB.HSExposure

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Wed Nov 9 10:01:05 UTC 2016

Issue #2759 has been updated by Peter Cock.

Description updated
Status changed from New to Resolved
% Done changed from 0 to 100

OK, marking as resolved. Thanks all.

Bug #2759: Unit test for Bio.PDB.HSExposure

* Author: Peter Cock
* Status: Resolved
* Priority: Normal
* Assignee: Biopython Dev Mailing List
* Category: Unit Tests
* Target version: Not Applicable
* URL: 
Prompted by looked at the example script hsexpo, I've written a unittest based test for the Bio.PDB.HSExposure.

I haven't checked it in yet because it prints out looks of warnings to stderr about oddities in the PDB file.  We could either add a clean PDB file to the examples, or do something with the stderr.

Note that the print-and-compare style test_PDB.py deals this this itself.  Perhaps run_tests.py should do something similar for the unittest based cases.

See also Bug 2754 which would actually make Bio.PDB print even more warnings to stderr.

test_PDB_HSExposure.py (4.29 KB)
biopdbtest.py (4.79 KB)
biopdbtest.py (8.88 KB)
biopdbtest.py (9.16 KB)

You have received this notification because you have either subscribed to it, or are involved in it.
To change your notification preferences, please click here and login: http://redmine.open-bio.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/biopython-dev/attachments/20161109/efa56c28/attachment-0001.html>

More information about the Biopython-dev mailing list