[Biopython-dev] Biopython 1.68 plans (mid August?)

[Peter Cock]

Yes :(

I did try emailing the NCBI a week or two ago, but evidently didn't
reach the right person.

I'll try to do the Biopython release this week...

Peter


On Mon, Aug 22, 2016 at 7:53 AM, Michiel de Hoon <mjldehoon at yahoo.com> wrote:
> As a related point, the NCBI website lists Biopython 1.67 as the
> https-compliant version, while this should be 1.68 if I understand
> correctly.
> See the table on this page:
> http://www.ncbi.nlm.nih.gov/home/develop/https-guidance.shtml
>
>
>
> Best,
> -Michiel
>
>
> On Friday, August 12, 2016 4:37 PM, Peter Cock <p.j.a.cock at googlemail.com>
> wrote:
>
>
> Thanks Ben,
>
> I used to use cygwin on Windows XP, and I would certainly
> be giving Windows Ubuntu Bash a test if I had a Windows 10
> machine - a very interesting development. I presume it can
> run its own copy of a (Linux Ubuntu) Python too?
>
> Peter
>
> On Thu, Aug 11, 2016 at 8:09 PM, Fulton, Ben <befulton at iu.edu> wrote:
>> Yes, I can do the installers (although I am moving away from strict
>> Windows to Windows Ubuntu Bash).
>>
>> --
>> Ben Fulton
>> Research Technologies
>> Scientific Applications and Performance Tuning
>> Indiana University
>> E-Mail: befulton at iu.edu
>>
>> -----Original Message-----
>> From: Biopython-dev
>> [mailto:biopython-dev-bounces+befulton=iu.edu at mailman.open-bio.org] On
>> Behalf Of Peter Cock
>> Sent: Thursday, August 11, 2016 5:15 AM
>> To: Biopython-Dev Mailing List <biopython-dev at mailman.open-bio.org>;
>> Christian Brueffer <christian at brueffer.de>; Ben Fulton <ben at benfulton.net>;
>> bow at bow.web.id
>> Subject: [Biopython-dev] Biopython 1.68 plans (mid August?)
>>
>> Dear Biopythoneers,
>>
>> The NCBI plan to switch to HTTPS on 1 September 2016, so it
>> would be good to get a new Biopython release out before that
>> with the changes to use HTTPS by default (which we know
>> works).
>>
>> To that end, I would like us to do the Biopython 1.68 release
>> this month (August), perhaps aiming for next week?
>>
>> Christian - we talked briefly about this at BOSC 2016 - but
>> would you be willing to try to work though the currently release
>> instructions (as far as possible without pushing any changes
>> to GitHub or PyPI) to help pin point what I have left unclear
>> with the recent website changes?
>>
>> http://biopython.org/wiki/Building_a_release
>>
>> Ben - would you be able to build the Windows installers
>> again please?
>>
>> Bow - are you ready to remove the experimental warning
>> from Bio.SearchIO? Or at least, most of it - I know you have
>> some changes in mind for the Exonerate parser:
>> https://github.com/biopython/biopython/pull/815
>>
>> Everyone - is there anything urgent we need to review and
>> merge? What am I overlooking? There are lots of pull
>> requests we could merge, and some are close to ready.
>>
>> Thanks,
>>
>> Peter
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