[Biopython-dev] Status of GFF Parsing in Biopython

[Brad Chapman]

Travis;
I recommend using gffutils:

https://github.com/daler/gffutils

which builds on the work of the prototype Biopython GFF parser. The plan
is to eventually merge gffutils functionality into Biopython, although
that is still work in progress.

Hope this helps,
Brad

> Devs,
>
> I'm not sure on the status of GFF parsing in Biopython; the wiki discussing
> it hasn't been updated since 2011, but the Github repo from the wiki at
> https://github.com/chapmanb/bcbb/tree/master/gff was updated about 2 months
> ago.
>
> I'm looking to use Biopython to peek through some MAKER results in a GFF
> file but it appears that it hasn't been implemented yet.
>
> -Travis
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