[Biopython-dev] RNA secondary structure modules

[Michiel de Hoon]

Hi Jan,

As far as I know there is no RNA secondary structure effort in Biopython, but I am interested and happy to coordinate.
How much overlap is there between the functionality in this module and the ViennaRNA package?

Best,
-Michiel.

--------------------------------------------
On Wed, 11/19/14, Jan Hajic, jr. <hajicj at gmail.com> wrote:

 Subject: [Biopython-dev] RNA secondary structure modules
 To: biopython-dev at biopython.org
 Date: Wednesday, November 19, 2014, 3:48 AM
 
 Hello,
 
 first of all, thanks to y'all for getting Biopython to where
 it is and
 beyond, it was an immense help in our project.
 
 I resurrected and extended a couple of modules for RNA
 secondary
 structure & manipulation from an old Biopython branch
 'rna' by
 Kristian Rother. I'd like to contribute them. Is there
 currently an
 RNA secondary structure effort in Biopython? If there is,
 who should I
 coordinate with?
 
 Thanks!
 
 Jan Hajic jr.
 
 -------------------------------
 ufal.mff.cuni.cz/jan-hajic-jr
 Institute of Formal and Applied Linguistics
 Charles University in Prague
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