[Biopython-dev] test_Fasttree_tool

[Peter Cock]

On Tue, Mar 11, 2014 at 12:04 PM, Tiago Antao <tra at popgen.net> wrote:
> Hi,
>
> When I run test_Fasttree_tool standalone, all goes well. But if I run
> it through run_test.py I get this:
> ======================================================================
> FAIL: runTest (__main__.ComparisonTestCase)
> test_Fasttree_tool
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "run_tests.py", line 302, in runTest
>     self.fail("Warning: Can't open %s for test %s" % (outputfile,
> self.name)) AssertionError: Warning: Can't
> open ./output/test_Fasttree_tool for test test_Fasttree_tool
>
> ----------------------------------------------------------------------
>
>
> Any ideas?
>
> Thanks,
> T

I'm surprised it ever works - the expected output file is not in git :(

Try:

$ run_tests.py -g test_Fasttree_tool
$ more output/test_Fasttree_tool
$ git add output/test_Fasttree_tool
$ git commit -m "Checking in missing output file for test_Fasttree_tool.py"

Peter