[Biopython-dev] NumPy 1.7 and NPY_NO_DEPRECATED_API warnings

[Peter Cock]

Great - thanks for letting us know that solved the problem :)

Peter

On Wed, Mar 12, 2014 at 12:17 AM, hari jayaram <harijay at gmail.com> wrote:
> Thanks Peter ..
> That was indeed the case. I had a python in
>
> /usr/local/lib/python2.7/site-packages/numpy
>
> That was getting called rather than the one in my .virtualenv
>
> Once I removed that python . The install progressed very smoothly
>
> Thanks for your help
>
> Hari
>
>
>
> On Tue, Mar 11, 2014 at 9:42 AM, Peter Cock <p.j.a.cock at googlemail.com>
> wrote:
>>
>> On Tue, Mar 11, 2014 at 1:37 PM, hari jayaram <harijay at gmail.com> wrote:
>> > Hi all,
>> > I just pull-ed from the git repository just now  and after installing
>> > the
>> > newest numpy and scipy ( also from their respective git repos)..when I
>> > try
>> > to install biopython I get the same error complaining that I need to
>> > define
>> > :
>> >
>> > #defining NPY_NO_DEPRECATED_API
>> >       NPY_1_7_API_VERSION" [-W#warnings]
>> >
>> > I tried adding to file
>> >
>> > "/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/old_defines.h"
>> > the following line
>> >
>> >
>> > #define  NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
>> >
>> >
>> > But it still fails to install with an error as indicated below.
>> >
>> > I am sorry I dont know how to work around this.
>> > Thanks for your help
>> >
>> > Hari
>>
>> I suspect based on this NumPy thread that it is a problem with
>> your NumPy install, perhaps you have some old files from a
>> previous NumPy installation which are confusing things?
>>
>> http://mail.scipy.org/pipermail/numpy-discussion/2014-March/069396.html
>>
>> Peter
>
>