[Biopython-dev] fastsimcoal

[Melissa Gymrek]

Hi,

Great I will implement what was discussed above. Regarding test cases, I
second what Tiago said about test_PopGen_SimCoal_nodepend.py, those cases
should stay the same. If/when simcoal2 is deprecated should this probably
be renamed to test_PopGen_Fastsimcoal_nodepend.py?
~M


On Thu, Feb 20, 2014 at 5:05 AM, Tiago Antão <tiagoantao at gmail.com> wrote:

> Hi,
>
>
> On 20 February 2014 09:46, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>
>
>> I would suggest making a copy of Tests/test_PopGen_SimCoal.py
>>
>
> +1
> There should be a test_PopGen_Fastsimcoal.py, I agree. Especially because
> I can envision the simcoal case disappearing medium-term.
>
>
>
>> for live testing with the new binary, and adding/copying static tests
>> in Tests/test_PopGen_SimCoal_nodepend.py if relevant.
>>
>>
> The input format should be the same. The binary non-dependent test cases
> are probably equal, me thinks.
>
> Tiago
>
>
> --
> "The truth may be out there, but the lies are already in your head" -
> Terry Pratchett
>