[Biopython-dev] Bio.Phylo tutorial

Tiago Antao tra at popgen.net
Wed Dec 3 17:05:42 UTC 2014


I am back with trying to get the tutorial running with Python 3 (after
the bugs were solved). I am hitting a problem (with both 2 and 3):

Phylo.convert("data/tree1.dnd", "newick", "data/tree1.xml", "nexml")

This fails, see:


It says that the file tree1.dnd does not exist.

Question: Is there a file missing in the tutorial? Or it is just a case
that simple.dnd or opuntia.dnd should be used instead (and the
tutorial amended)?


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