[Biopython-dev] Bio.Phylo tutorial

[Tiago Antao]

Hi,

I am back with trying to get the tutorial running with Python 3 (after
the bugs were solved). I am hitting a problem (with both 2 and 3):

Phylo.convert("data/tree1.dnd", "newick", "data/tree1.xml", "nexml")

This fails, see:

http://localhost:8888/notebooks/13%20-%20Phylogenetics%20with%20Bio.Phylo.ipynb

It says that the file tree1.dnd does not exist.

Question: Is there a file missing in the tutorial? Or it is just a case
that simple.dnd or opuntia.dnd should be used instead (and the
tutorial amended)?

Merci,
Tiago