[Biopython-dev] RNA secondary structure modules

Eric Talevich eric.talevich at gmail.com
Mon Dec 1 18:35:57 UTC 2014

Hi Jan,

Thanks for taking the initiative here. As I recall, Kristian Rother's RNA
branch was the main RNA secondary structure effort in Biopython. Have you
been in touch with him? He would be the most qualified to review this new

Normally we review a new contribution through a pull request on Github.
Have you put your branch on Github where we can see it?


On Tue, Nov 18, 2014 at 10:48 AM, Jan Hajic, jr. <hajicj at gmail.com> wrote:

> Hello,
> first of all, thanks to y'all for getting Biopython to where it is and
> beyond, it was an immense help in our project.
> I resurrected and extended a couple of modules for RNA secondary
> structure & manipulation from an old Biopython branch 'rna' by
> Kristian Rother. I'd like to contribute them. Is there currently an
> RNA secondary structure effort in Biopython? If there is, who should I
> coordinate with?
> Thanks!
> Jan Hajic jr.
> -------------------------------
> ufal.mff.cuni.cz/jan-hajic-jr
> Institute of Formal and Applied Linguistics
> Charles University in Prague
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> Biopython-dev at mailman.open-bio.org
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