[Biopython-dev] KEGG enhancements

[Peter Cock]

On Tue, Feb 5, 2013 at 9:36 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Tue, Feb 5, 2013 at 12:33 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>> On Tue, Feb 5, 2013 at 12:32 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>>> Hi all,
>>>
>>> We have a couple of new pull requests for KEGG enhancements,
>>> which we can look at after the imminent Biopython 1.61 release
>>> goes out this week.
>>>
>>> Kevin's working on the REST API,
>>> https://github.com/biopython/biopython/pull/152
>>>
>>> Leighton's working on KGML and graphics,
>>
>> Sorry, the correct URL, https://github.com/biopython/biopython/pull/155
>>
>> Details below,
>
> See also Leighton's blog posts about this work (with pictures):
> http://armchairbiology.blogspot.co.uk/2013/01/keggwatch-part-i.html
> http://armchairbiology.blogspot.co.uk/2013/02/keggwatch-part-ii.html
> http://armchairbiology.blogspot.co.uk/2013/02/keggwatch-part-iii.html
>
> Regards,
>
> Peter

Hi all,

Given no comments positive or negative here or the original or
updated pull request (which I have just updated for Python 3),
I am inclined to apply this now (rebasing it onto the master):

https://github.com/biopython/biopython/pull/173

Once that is done, I'd like to integrate Kevin's KEGG REST API
work replacing Leighton's KGML_scrape.py code:

https://github.com/biopython/biopython/pull/152

Peter