[Biopython-dev] Pypy x64 tests Was: Pypy2 on Win7 x64, numpy problem

[Manlio Calvi]

Here's the logs, enjoy!

Manlio

On Mon, Apr 28, 2014 at 8:53 PM, Manlio Calvi <manlio.calvi at gmail.com> wrote:
> OK the Tests on Pypy 2 passed but a lot was skipped for one reason to another.
> After this mail I'll send another with builds and tests log for
> archive and lookups
>
> Manlio
>
>
> On Mon, Apr 28, 2014 at 3:02 PM, Manlio Calvi <manlio.calvi at gmail.com> wrote:
>> I tried to install their Numpy (the Numpypy project) because I read
>> about their difficulties about porting Cpython Numpy but even with
>> that I get errors everywhere and don't compile it.
>> OK giving the tests ignore Numpy(py) I'll try to build biopython against it.
>>
>>
>>
>> On Mon, Apr 28, 2014 at 2:51 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>>> On Mon, Apr 28, 2014 at 9:09 AM, Manlio Calvi <manlio.calvi at gmail.com> wrote:
>>>> Hi all,
>>>>
>>>> Yesterday, after a short break on compiling, I tried to build my pypy
>>>> 2 stack to run the biopython tests on it, the problem is on numpy, for
>>>> every thing I tried to compile their numpy version I failed, out of
>>>> curiosity I tried to compile numpy on pypy3 but get even worse. In the
>>>> end both don't compile, at this point I stopped after looking my pypy
>>>> envs are sane.
>>>>
>>>> Manlio
>>>
>>> NumPy has a ton of C code, and will not work on PyPy.
>>> Attempting to compile/install NumPy under PyPy is a waste
>>> of time.
>>>
>>> However, the PyPy team are reimplementing (some of)
>>> NumPy themselves as the NumPyPy project - see e.g.
>>> http://buildbot.pypy.org/numpy-status/latest.html
>>>
>>> Currently Biopython ignores NumPy (and NumPyPy) under
>>> PyPy - last time I did a proper test there were still too many
>>> things missing to make it worth the effort.
>>>
>>> However, this is something we should review - I would hope
>>> by now that at least the PDB parsing code might work - even
>>> if things like SVD and numpy.linalg are not available on PyPy.
>>>
>>> Similarly, NumPy won't work under Jython.
>>>
>>> Peter
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