[Biopython-dev] Codon usage module?

Alexey Morozov alexeymorozov1991 at gmail.com
Wed Apr 23 08:09:40 UTC 2014

Biopython currently supports only a limited set of operations for codon
usage analysis, so I made my own module for stuff like counting codon usage
in genes, clustering them based on codon usage, making some genome- or
gene-wide statistics,  and so on. If I want to get it to main release
eventually, what are the rules?
In particular, is NumPy dependency OK? Should all my classes inherit from
something? Are there any limits on how data is to be internally stored and

Alexey Morozov,
LIN SB RAS, bioinformatics group.
Irkutsk, Russia.

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