[Biopython-dev] Win7 x64 - python 3.4 - Phylo and searchIO

[Manlio Calvi]

I got those two new errors:

======================================================================
ERROR: test_unicode_exception (test_Phylo.IOTests)
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Traceback (most recent call last):
  File "C:\Users\Public\BioPython3\biopython\Tests\test_Phylo.py",
line 57, in test_unicode_exception
    tree = Phylo.read(EX_NEWICK_BOM, 'newick')
  File "C:\Users\Public\BioPython3\biopython\build\lib.win-amd64-3.4\Bio\Phylo\_io.py",
line 65, in read
    tree = next(tree_gen)
  File "C:\Users\Public\BioPython3\biopython\build\lib.win-amd64-3.4\Bio\Phylo\_io.py",
line 53, in parse
    for tree in getattr(supported_formats[format], 'parse')(fp, **kwargs):
  File "C:\Users\Public\BioPython3\biopython\build\lib.win-amd64-3.4\Bio\Phylo\NewickIO.py",
line 107, in parse
    for line in self.handle:
  File "C:\Python34\lib\encodings\cp1252.py", line 23, in decode
    return codecs.charmap_decode(input,self.errors,decoding_table)[0]
UnicodeDecodeError: 'charmap' codec can't decode byte 0x9d in position
15: character maps to <undefined>


======================================================================
FAIL: test_xml_2226_blastn_006 (test_SearchIO_blast_xml.BlastXmlSpecialCases)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "C:\Users\Public\BioPython3\biopython\Tests\test_SearchIO_blast_xml.py",
line 3127, in test_xml_2226_blastn_006
    "Expected one BiopythonParserWarning, got %r" % w)
AssertionError: 2 != 1 : Expected one BiopythonParserWarning, got
[<warnings.WarningMessage object at 0x000000000BD0FE10>,
<warnings.WarningMessage object at 0x000000000C0219B0>]


Manlio