[Biopython-dev] Errors about installing biopython 1.61

[林行众]

I am very Sorry about my mistake.
I want to install biopython 1.61 in a local server(CentOS),
    python setup.py build
    python setup.py test
and then showed some errors:


======================================================================
FAIL: Test an input file containing a single sequence.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_Clustalw_tool.py", line 166, in test_single_sequence
    self.assertTrue(str(err) == "No records found in handle")
AssertionError

======================================================================
ERROR: Test Entrez.read from URL
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_Entrez_online.py", line 34, in test_read_from_url
    rec = Entrez.read(einfo)
  File "/share/fg2/Linxzh/biopython-1.61/build/lib.linux-x86_64-2.6/Bio/Entrez/__init__.py",
line 362, in read
    record = handler.read(handle)
  File "/share/fg2/Linxzh/biopython-1.61/build/lib.linux-x86_64-2.6/Bio/Entrez/Parser.py",
line 184, in read
    self.parser.ParseFile(handle)
  File "/share/fg2/Linxzh/biopython-1.61/build/lib.linux-x86_64-2.6/Bio/Entrez/Parser.py",
line 322, in endElementHandler
    raise RuntimeError(value)
RuntimeError: Unable to open connection to #DbInfo?dbaf=

======================================================================
ERROR: Run tutorial doctests.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_Tutorial.py", line 152, in test_doctests
ValueError: 4 Tutorial doctests failed: test_from_line_05671,
test_from_line_06030, test_from_line_06190, test_from_line_06479

----------------------------------------------------------------------
Ran 213 tests in 1621.002 seconds

FAILED (failures = 3)


i use python 2.6.5

2013/5/12 林行众 <linxzh1989 at gmail.com>:
> I've run the