[Biopython-dev] HMMER3.1 beta test 1 released

Peter Cock p.j.a.cock at googlemail.com
Thu May 30 10:23:01 EDT 2013


Hi Bow,

Just FYI, see http://selab.janelia.org/people/eddys/blog/?p=759

"The programs phmmer, hmmsearch, and hmmscan offer a new
tabular output format for easier automated parsing, --pfamtblout.
his format is the one used internally by Pfam, but we make it more
broadly available in case it is of use elsewhere. An analagous
output format is available for nhmmer and nhmmscan, --dfamtblout."

Something to consider for SearchIO later on...

Regards,

Peter


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