[Biopython-dev] Errors about installing biopython 1.61
=?GB2312?B?wdbQ0Nba?=
linxzh1989 at gmail.com
Sun May 12 08:57:25 EDT 2013
I am very Sorry about my mistake.
I want to install biopython 1.61 in a local server(CentOS),
python setup.py build
python setup.py test
and then showed some errors:
======================================================================
FAIL: Test an input file containing a single sequence.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test_Clustalw_tool.py", line 166, in test_single_sequence
self.assertTrue(str(err) == "No records found in handle")
AssertionError
======================================================================
ERROR: Test Entrez.read from URL
----------------------------------------------------------------------
Traceback (most recent call last):
File "test_Entrez_online.py", line 34, in test_read_from_url
rec = Entrez.read(einfo)
File "/share/fg2/Linxzh/biopython-1.61/build/lib.linux-x86_64-2.6/Bio/Entrez/__init__.py",
line 362, in read
record = handler.read(handle)
File "/share/fg2/Linxzh/biopython-1.61/build/lib.linux-x86_64-2.6/Bio/Entrez/Parser.py",
line 184, in read
self.parser.ParseFile(handle)
File "/share/fg2/Linxzh/biopython-1.61/build/lib.linux-x86_64-2.6/Bio/Entrez/Parser.py",
line 322, in endElementHandler
raise RuntimeError(value)
RuntimeError: Unable to open connection to #DbInfo?dbaf=
======================================================================
ERROR: Run tutorial doctests.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test_Tutorial.py", line 152, in test_doctests
ValueError: 4 Tutorial doctests failed: test_from_line_05671,
test_from_line_06030, test_from_line_06190, test_from_line_06479
----------------------------------------------------------------------
Ran 213 tests in 1621.002 seconds
FAILED (failures = 3)
i use python 2.6.5
2013/5/12 ÁÖÐÐÖÚ <linxzh1989 at gmail.com>:
> I've run the
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