[Biopython-dev] [Biopython - Bug #3439] (New) SwissProt parser breaks when parsing '[' crossref

[redmine at redmine.open-bio.org]

Issue #3439 has been reported by Iddo Friedberg.

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Bug #3439: SwissProt parser breaks when parsing '[' crossref
https://redmine.open-bio.org/issues/3439

Author: Iddo Friedberg
Status: New
Priority: Normal
Assignee: 
Category: 
Target version: 
URL: 


It seems the SwissProt parser treats opening square brackets as comments in the cross-reference records. So if there is a '[' in the freetext, everything after that does not get parsed.

Seems like the relevant function is "_read_dr" line 491 in BioSwissProt/__init__.py

Thanks,

Iddo


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