[Biopython-dev] [Biopython - Bug #3434] (New) PDB.PDBParser

[redmine at redmine.open-bio.org]

Issue #3434 has been reported by Mirslaw Syzdek.

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Bug #3434: PDB.PDBParser 
https://redmine.open-bio.org/issues/3434

Author: Mirslaw Syzdek
Status: New
Priority: Normal
Assignee: 
Category: 
Target version: 
URL: 


Two months ago I downloaded a pdb file from NCBI (Database: Structure, Name: 1EZQ). With this file the following code works fine:

@parser = PDB.PDBParser()
struct = parser.get_structure('1EZQ.pdb', '1EZQ.pdb')
ppb = PDB.PPBuilder()
peptides = ppb.build_peptides(struct)@

Few days ago I downloaded the pdb file one more time. For the new file above code stopped working. The PDBParser is throwing an error. The error is cause by different column separation (see the line 423 in the attached files).  


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