[Biopython-dev] [Biopython - Bug #3444] (New) Missing DTD files

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Wed Jul 17 22:48:15 UTC 2013


Issue #3444 has been reported by Emanuil Tolev.

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Bug #3444: Missing DTD files
https://redmine.open-bio.org/issues/3444

Author: Emanuil Tolev
Status: New
Priority: Low
Assignee: 
Category: 
Target version: 
URL: 


When running

handle = Entrez.esearch(db="pubmed", term="Wellcome[GRNT]", retmax=100000)

and then .efetch on all the 70k+ results ...

I get warnings about the following missing DTD files:

http://www.ncbi.nlm.nih.gov/corehtml/query/DTD/pubmed_130501.dtd
http://www.ncbi.nlm.nih.gov/corehtml/query/DTD/nlmmedlinecitationset_130501.dtd
http://www.ncbi.nlm.nih.gov/corehtml/query/DTD/bookdoc_130101.dtd

I downloaded them locally, but the warnings say I should "file a bug" too to let you know.


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