[Biopython-dev] Releasing (a beta of) Biopython 1.62 this week?

[Zheng Ruan]

I don't think this will cause any problems if methods
for MultipleSeqAlignment are there. I notice the latest code of
MultipleSeqAlignment inherits Bio.Align.Generic.Alignment. Will that code
(such as __str__, __getitem__, _str_line) be ported to
MultipleSeqAlignment? Thanks!

Zheng

在 2013年7月12日星期五，Peter Cock 写道：

> On Fri, Jul 12, 2013 at 10:06 AM, Michiel de Hoon <mjldehoon at yahoo.com<javascript:;>>
> wrote:
> > Based on the Biopython deprecation schedule policy, we can remove the
> > following pieces of code in release 1.62:
> >
> > Bio.Align.__init__: the get_column and add_sequence methods
> > Bio.Align.Generic: the class Alignment in its entirety
>
> Eric & Zheng, that won't cause any problems for your GSoC work
> will it?
>
> > Bio.Graphics.GenomeDiagram._AbstractDraw: the .xcentre and .ycentre
> > properties and their setters in the class AbstractDrawer
> > Bio.Graphics.GenomeDiagram._Graph: The .centre property and its setter in
> > the class GraphData
>
> Sounds fine - I can do those,
>
> Thanks Michiel,
>
> Peter
>