[Biopython-dev] Releasing (a beta of) Biopython 1.62 this week?

[Michiel de Hoon]

The following pieces of code had a PendingDeprecationWarning in Biopython release 1.61, and can be upgraded to a BiopythonDeprecationWarning:

Bio.Blast.NCBIStandalone (entire module). This module has had a PendingDeprecationWarning since September 2010.

Bio.Motif (entire module). Its functionality is available from Bio.motifs, so Bio.Motif can be deprecated.

Bio.ParserSupport (entire module). This module is currently only being used by Bio.Blast.NCBIStandalone, and has had a PendingDeprecationWarning since September 2011.

Any final objections?

Best,
-Michiel