[Biopython-dev] Error in SeqFeature.CompoundLocation parsing NCBI efetch format

[Peter Cock]

On Fri, Dec 6, 2013 at 10:38 AM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Fri, Dec 6, 2013 at 10:26 AM, Brynjar Smári Bjarnason wrote:
>
>> Is it likely that this will find its way into 1.64? Not that I am in any
>> rush since it is working, just wondering for the one that needs to maintain
>> the Biopython versions.
>
> Yes, once the release is formally announced I intend to commit this
> change (and a test - probably the very same example GenPept file
> you reported). It is possible that we'll have a better solution in place
> for Biopython 1.64 to handle these locations without simple dropping
> the bond term.

This workaround has now been committed to the main branch,
https://github.com/biopython/biopython/commit/ddbe6dc5dc08aa5079dfd29bc240651675c48427

Along with the example file as a test case:
https://github.com/biopython/biopython/commit/44ec2b2ce4687055a50f246ac264690ed664326c

Thank you,

Peter