[Biopython-dev] Releasing Biopython 1.62 this week?

[Eric Talevich]

On Tue, Aug 27, 2013 at 1:43 AM, Peter Cock <p.j.a.cock at googlemail.com>wrote:

> Continuing this thread under a new title, as below, I would
> like to do the Biopython 1.62 release in the next day or two:
>
> http://lists.open-bio.org/pipermail/biopython-dev/2013-August/010836.html
>
> Peter
>
> On Tue, Aug 27, 2013 at 9:41 AM, Peter Cock wrote:
> > On Mon, Aug 26, 2013 at 5:04 PM, Wibowo Arindrarto wrote:
> >>
> >>> So you'd be comfortable with removing the experimental warning
> >>> for SearchIO in Biopython 1.62 final (this week if the PDB occupancy
> >>> thing is resolved)?
> >>
> >> Yes. I think all public-facing modules are ok now. There are still two
> >> issue which I consider minor, but I think should be mentioned before
> >> we lift the warning:
> >>
> >> ...
> >>
> >> Other than these, some planned features are implementing the HMMER3.1
> >> parser (which I think should not interfere with lifting the warning).
> >
> > We'll also want to update the Tutorial as well, merging the BLAST
> > and SearchIO chapters. Let's start work on this just after releasing
> > Biopython 1.62 then, which I think we can now go ahead with :)
> >
> > Lenna has sorted out the PDB occupancy issue, and Eric has
> > updated the PRANK unit tests.
> >
> > I think this means we are OK to do the release in the next day
> > or two? Any objections?
> >
> > Regards,
> >
> > Peter
>


Sounds good. Mind if I sneak in a quick update to the Phylo chapter of the
Tutorial to mention CDAO support?

Also, has anything else noteworthy been added since the beta that we can
announce in the NEWS file?

Thanks,
Eric