[Biopython-dev] Optimization of PDBParser and friends

Peter Cock p.j.a.cock at googlemail.com
Fri Sep 7 01:03:22 UTC 2012

On Thu, Sep 6, 2012 at 2:48 PM, João Rodrigues <anaryin at gmail.com> wrote:
> Ok, thanks.
> The modules are littered with set/get methods and adding DeprecationWarning
> to all of them might be a bit too much.. Instead, should we add one single
> warning at the top of the PDBParser, since this is the only obligatory
> module for Bio.PDB so that everyone gets the warning message once and once
> only? Otherwise I can imagine several warnings popping up everywhere..

If you use the exact same message, then I think you'll only see the
warning once. Try it with a couple of the get/set methods to confirm.

Having the warning happen even if you don't use the get/set seems


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