[Biopython-dev] TAIR/AGI support

Brad Chapman chapmanb at 50mail.com
Wed Sep 5 20:45:19 EDT 2012


Kevin;
Thanks for the e-mail and offers of code. Always happy to have other
folks involved with the project.

> What's the status of TAIR AGIs in BioPython (I can see no mention of them,
> or support for them)? I've written a brief module which allows a user to
> query NCBI with a TAIR AGI, returning a Seq object (via Efetch). Is there
> any interest in including such functionality in BioPython?

Is the code available on GitHub to get a better sense of all the
functionality it supports? Do you have an idea where it would fit best?
As a tair submodule inside of Bio.Entrez, or somewhere else?

> More generally, are there any particular areas of BioPython development
> which could use an extra pair of hands?

Following the mailing list for discussions on current projects is the
best way to get a sense of what different folks are working on. The
issue tracker also has open issues and features that could use attention
if anything there strikes your fancy:

https://redmine.open-bio.org/projects/biopython

Hope this helps,
Brad



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