[Biopython-dev] NumPy dialog when Biopython installed from automated programs

[Connor McCoy]

Hi Brad,

Thank you so much for the quick reply.  I just got a chance to test this,
and it seems to be working again.

Best,
Connor

On Sun, Oct 28, 2012 at 11:55 AM, Brad Chapman <chapmanb at 50mail.com> wrote:

>
> Connor;
>
> > I remember this being resolved, but when I try to install biopython with
> > pip, it fails:
>
> Thanks for the report. It looks like the command line options pip uses
> to call setup.py changed a bit, so the hack we have in place is no
> longer working. I pushed a fix for this:
>
>
> https://github.com/chapmanb/biopython/commit/e05a355e3e9825c44c4a9b3bdfdda25c9a92c9c4
>
> which seems to resolve the issue and hopefully make it more robust going
> forward. Could you confirm it works on your system:
>
> $ cd /tmp
> $ git clone git://github.com/chapmanb/biopython.git
> $ sudo pip install /tmp/biopython
>
> If so, I'll push this into the main repo for the next release. Thanks
> again for letting us know about the problem,
> Brad
>



-- 
Connor McCoy
Fred Hutchinson Cancer Research Center
1100 Fairview Ave N.
Seattle, WA 98109-1924
cmccoy at fhcrc.org