[Biopython-dev] [Patch] Genbank Parser

Björn Grüning bjoern at gruenings.eu
Mon Oct 1 21:44:10 UTC 2012


Hi Peter,

> >
> > the tbl2asn tool from the ncbi creates genbank files that did not have a
> > version number. Unfortunately that version number is used to fill
> > consumer.data.id.
> > I implemented the following fall-back:
> > If there is no version information available than it takes the
> > consumer.data.name for the consumer.data.id. Does that makes sense?
> >
> > Thanks!
> > Bjoern
> 
> Can you share some example output from tbl2asn that shows
> this problem? Ideally something small we could include as a
> unit test.

please find attached a small, stripped version of such an genbank file.

Thanks,
Bjoern

> Thanks,
> 
> Peter

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