[Biopython-dev] Numpy/Scipy and Biopython

João Rodrigues anaryin at gmail.com
Tue Nov 27 15:40:58 UTC 2012

Hi Diego,

Nice post and nice ideas. As for Bio.PDB, indeed representing the entire
structure as a Nx3 matrix of coordinates is super attractive, but would
require a deep change in the current framework. Also, manipulation of the
structure (removing atoms, adding atoms, etc) would become a bit more
complicated.. If you have good ideas to do this, please do share them. I
know for example ProDy and csb use a similar approach.



2012/11/27 Diego Zea <diego_zea at yahoo.com.ar>

> http://stackoverflow.com/questions/13552916/numpy-and-biopython-must-be-integrated

More information about the Biopython-dev mailing list