[Biopython-dev] Numpy/Scipy and Biopython

[João Rodrigues]

Hi Diego,

Nice post and nice ideas. As for Bio.PDB, indeed representing the entire
structure as a Nx3 matrix of coordinates is super attractive, but would
require a deep change in the current framework. Also, manipulation of the
structure (removing atoms, adding atoms, etc) would become a bit more
complicated.. If you have good ideas to do this, please do share them. I
know for example ProDy and csb use a similar approach.

Cheers,

João

2012/11/27 Diego Zea <diego_zea at yahoo.com.ar>

>
> http://stackoverflow.com/questions/13552916/numpy-and-biopython-must-be-integrated