[Biopython-dev] json formatting of SeqRecord objects

[Alex Leach]

Dear all,

I've written a fairly simple SeqRecord formatter to convert sequences to/from 
JSON objects, and wondered if it might be useful enough to be included in 
BioPython.

It currently injects 'json' into SeqIO and AlignIO's _FormatToIterator and 
_FormatToWriter dictionaries, so can be used like any other SeqRecord format. 
I'm not sure where exactly I should submit it, but I thought here might do as 
an initial proposal..

I attach the source code. If you'd be interested in using it, let me know and 
I'll tidy it up to standards.

Kind regards,
Alex

-- 
Alex Leach BSc. MRes.
Department of Biology
University of York
York YO10 5DD
United Kingdom
EMAIL DISCLAIMER: http://www.york.ac.uk/docs/disclaimer/email.htm
-------------- next part --------------
A non-text attachment was scrubbed...
Name: jsonIO.py
Type: text/x-python
Size: 5756 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/biopython-dev/attachments/20120524/93ba6f3a/attachment.py>