[Biopython-dev] SeqIO circular

[Peter Cock]

On Thu, Mar 29, 2012 at 3:38 PM, Matthias Bernt <MatatTHC at gmx.de> wrote:
> Hi,
>
> Is it possible to get the property if a genome is circular / linear
> from SeqIO applied to genbank files? I could not find it.
>
> There is also a related bugreport:
> http://bugzilla.open-bio.org/show_bug.cgi?id=2578
>
> I used the old parser before and switched to SeqIO which I really like
> for the possibilities to parse different formats... but I really need
> the information.

Does anyone happen to have a BioPerl + BioSQL setup installed
and working? IIRC checking that to make sure however we
store the circular was compatible was the only real hurdle.

Peter