[Biopython-dev] buildbot failure in Biopython on Windows XP - Python 2.6

[Eric Talevich]

On Mon, Jun 4, 2012 at 5:58 PM, Peter Cock <p.j.a.cock at googlemail.com>wrote:

> On Fri, Jun 1, 2012 at 5:21 PM, Eric Talevich <eric.talevich at gmail.com>
> wrote:
> >
> > Ack, this is what I get for using pydoc. It's fixed now:
> >
> https://github.com/biopython/biopython/commit/2494c77c064e1076bb38f5e929b9e68eaee4f841
> >
>
> Almost ;)
>
> It is still failing on (older releases of) Python 3.1 due to
> http://bugs.python.org/issue10353
>
> e.g. From
> http://testing.open-bio.org/biopython/builders/Linux%20-%20Python%203.1/builds/611/steps/shell/logs/stdio
>
> ======================================================================
> ERROR: test_root_at_midpoint (test_Phylo.TreeTests)
> Tree.root_at_midpoint: reroot at the tree's midpoint.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File
> "/home/pjcock/repositories/BuildBot/lin31/build/build/py3.1/Tests/test_Phylo.py",
> line 142, in test_root_at_midpoint
>    self.assertAlmostEqual(deep_dist_0, deep_dist_1, 1)
> TypeError: assertAlmostEqual() takes exactly 3 positional arguments (4
> given)
>
> ----------------------------------------------------------------------
>
> Switching from a positional argument to using the places
> keyword will fix it.
>
> Peter
>

Indeed. Buildbot saves the day again...
https://github.com/biopython/biopython/commit/f74fec7e8b8614fca96dcc7b5a60e12f3927a37b