[Biopython-dev] [Biopython - Bug #3327] (New) HMMparse.py has some difficulty in loading hmmsearch result file

[redmine at redmine.open-bio.org]

Issue #3327 has been reported by ruan zheng.

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Bug #3327: HMMparse.py has some difficulty in loading hmmsearch result file
https://redmine.open-bio.org/issues/3327

Author: ruan zheng
Status: New
Priority: Normal
Assignee: 
Category: 
Target version: 
URL: 


Hi,

I just download the HMMparse.py file in want of dealing with my hmmsearch result. But I found a problem about using it to load my data. When I import HMMparse in python environment and type HMMparse.HMMparser('hmmsearch_result'), it reports a problem of "invalid literal for int() with base 10:". I try to locate the error. And I found in line 60 and 61 of HMMparse.py file, it missed a possible value of '[]'. By adding s != '[]' in the argument list, it works fine to me.

I attached my sample file.

Ruan Zheng


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