[Biopython-dev] Fwd: [biopython] Added transform and copy method to Entity in biopython.PDB (#25)

[Peter Cock]

Sorry, didn't realise this was direct to me and not the mailing list.
Would everyone be OK with git pull requests coming straight here?

Anyway - Eric, would this be something you could look at?

Peter


---------- Forwarded message ----------
From: benreynwar
<reply+i-2958669-14408e039dee774169d6f09c683146c3f42dd0b9-63959 at reply.github.com>
Date: Tue, Jan 24, 2012 at 11:12 PM
Subject: [biopython] Added transform and copy method to Entity in
biopython.PDB (#25)
To: Peter Cock <p.j.a.cock at googlemail.com>


Minor changes to biopython.PDB to allow transforms to be applied to
entities and copies of entities to be made.  Also fixed a bug in the
transform method of Atom.  Tests are included.
The changes are from a few months ago but they still merge cleanly
into the current master.

You can merge this Pull Request by running:

 git pull https://github.com/benreynwar/biopython master

Or you can view, comment on it, or merge it online at:

 https://github.com/biopython/biopython/pull/25

-- Commit Summary --

* Added tranform method to Entity.
* Add test for transform method.
* Adding copy method for Entities
* Added an insert method to Entity.  This allows a child to be
inserted into a specified position in the child_list which effects
position in the PDB output.
* Fixed bug in transform method of Atom (dot product order).

-- File Changes --

M Bio/PDB/Atom.py (14)
M Bio/PDB/Entity.py (40)
M Tests/test_PDB.py (70)

-- Patch Links --

 https://github.com/biopython/biopython/pull/25.patch
 https://github.com/biopython/biopython/pull/25.diff

---
Reply to this email directly or view it on GitHub:
https://github.com/biopython/biopython/pull/25