[Biopython-dev] Calculating bootstrap values from a set of trees

[Nicolas Rochette]

Hi Peter,

What you are looking for exists in the bppconsense program from the 
"Bio++ Suite" http://home.gna.org/bppsuite/

With something like :
bppconsense input.tree.file=NEWICK_FILE method=Input 
input.trees.file=BOOTSTRAPS_FILE output.tree.file=OUTPUT_FILE

Regards,

Nicolas Rochette