[Biopython-dev] [Biopython - Bug #3227] deprecated genbank localstion parser doesn't indicate what replaces it

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Issue #3227 has been updated by Peter Cock.


The new GenBank/EMBL parser will use the new location parsing automatically. If you were using this (via Bio.GenBank or via Bio.SeqIO) you wouldn't have needed to change anything.

The only people affected by the deprecation would be people using Bio.GenBank.LocationParser directly. Right now, the new location parsing code isn't really designed to be used on its own. In order to try and help you, I need to know what you were using Bio.GenBank.LocationParser for.
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Bug #3227: deprecated  genbank localstion parser doesn't indicate what replaces it
https://redmine.open-bio.org/issues/3227

Author: Mark Diekhans
Status: New
Priority: Normal
Assignee: Biopython Dev Mailing List
Category: Main Distribution
Target version: 
URL: 


Module LocationParser says:
Code used for parsing GenBank/EMBL feature location strings (DEPRECATED)

but it doesn't indicate what the replace is for this module. I am happy to make changes as biopython evolves, but some guidance as to how to change would be very helpful


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