[Biopython-dev] Jython updated on mac build slave

[Peter Cock]

On Thu, Jul 21, 2011 at 6:55 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> Hi all,
>
> If anyone is curious about the following unit test failure,
>
> FAIL: test_SeqIO
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File "run_tests.py", line 241, in runTest
>    assert expected_line == output_line, \
> AssertionError:
> Output  : " Failed: 'ascii' codec can't decode byte 0xe5 in position
> 0: ordinal not in range(128)"
> Expected: " Checking can write/read as 'clustal' format"
>
> This was from converting a new SeqXML file into FASTA, where a
> description contained non-ASCII. It works fine on C Python, but was
> failing under Jython 2.5.1. The solution? Update to Jython 2.5.2
>
> As part of this work it means all the build slaves now run Jython 2.5.2
> rather than a mix of this and Jython 2.5.1 so I have standardised this
> for the buildbot. There is now one less column listed here:
>
> http://testing.open-bio.org:8010/tgrid
>
> or one less row with the other view:
>
> http://testing.open-bio.org:8010/grid
>
> Sadly this seems to have lost the old build history under Jython,
> but I don't mind too much.

Note the Windows buildslave is still on Jython 2.5.1 right now,
http://testing.open-bio.org/biopython/builders/Windows%20XP%20-%20Jython%202.5/builds/0/steps/shell/logs/stdio

Peter