[Biopython-dev] PAML unit test failure

[Brandon Invergo]

So, just to confirm, this is resolved then?

Sorry again everyone, I dropped the ball on this one.

-brandon

On Thu 14 Jul 2011 10:25:26 AM CEST, Peter Cock wrote:
> Hi guys,
> 
> We're seeing new failures on the buildbot under Python 3, e.g.
> http://testing.open-bio.org/biopython/builders/Linux%20-%20Python%203.2/builds/147/steps/shell/logs/stdio
> 
> ======================================================================
> ERROR: testOptionExists (test_Baseml.ModTest)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>    File "/home/pjcock/repositories/BuildBot/lin32/build/build/py3.2/Tests/test_Baseml.py",
> line 94, in testOptionExists
>      self.bml.set_option, "xxxx", 1)
> AttributeError: 'Baseml' object has no attribute 'set_option'
> 
> ======================================================================
> ERROR: testOptionExists (test_Codeml.ModTest)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>    File "/home/pjcock/repositories/BuildBot/lin32/build/build/py3.2/Tests/test_Codeml.py",
> line 92, in testOptionExists
>      self.cml.set_option, "xxxx", 1)
> AttributeError: 'Codeml' object has no attribute 'set_option'
> 
> ======================================================================
> ERROR: testOptionExists (test_Yn00.ModTest)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>    File "/home/pjcock/repositories/BuildBot/lin32/build/build/py3.2/Tests/test_Yn00.py",
> line 67, in testOptionExists
>      self.yn00.set_option, "xxxx", 1)
> AttributeError: 'Yn00' object has no attribute 'set_option'
> 
> ----------------------------------------------------------------------
> 
> Caused by this commit,
> 
> https://github.com/biopython/biopython/tree/de671e1baf3faa0ed8c10835397e308b1cf1b59d
> 
> I couldn't see a matching change to the unit tests on Brandon's branch
> to apply, so I just fixed it:
> 
> https://github.com/biopython/biopython/commit/145fe2a01afb4092cb2e862142dd04234410b74f
> 
> Peter