[Biopython-dev] SeqIO Abi Parser

Peter Cock p.j.a.cock at googlemail.com
Thu Jul 28 19:01:29 EDT 2011


On Tue, Jul 26, 2011 at 11:37 AM, Wibowo Arindrarto wrote:
>
> I'm looking forward to your review!
>

Hi Bow,

I made a start tonight,
https://github.com/peterjc/biopython/tree/seqio-abi

I haven't added the ABI files to test_SeqIO.py yet,
there is some alphabet issue to check there.

I noticed that EMBOSS seqret (at least the old
copy I had installed on my laptop, v6.1.0 I think)
was able to give ABI records identifiers (rather
than the hack of using the filename).

Peter


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