[Biopython-dev] curious error from HMM unit test

Peter biopython at maubp.freeserve.co.uk
Thu Jan 27 16:13:32 UTC 2011


On Thu, Jan 27, 2011 at 3:43 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
>
> So this looks like a bug in either Jython 2.5.2 RC3 and/or Java under CentOS.
>

Same fatal error from test_HMMCasino.py using Jython 2.5.1 on this machine.
This could be two bugs (one in Java causing the fatal error, and one in Jython
causing the intermittent UnboundLocalError).

I think for now I'll just disable this test on Jython,
https://github.com/biopython/biopython/commit/8a16e24a1e1076a93957b61b28e933a0cf65d49f

Peter



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