[Biopython-dev] [Bug 3166] Bio.PDB.DSSP fails to work on PDBs with HETATM

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3166





------- Comment #10 from macrozhu+biopy at gmail.com  2011-01-19 06:00 EST -------
Hi, Eric,
thanks for the nice code compression :)

A mistake in my comments among the code ought to be corrected: the "9999 atoms"
should be "9999 residues". 

In addition, a quick search shows that biopython 1.56 uses still
tempfile.mktemp() in the following files.

./Scripts/xbbtools/xbb_blastbg.py
./Tests/test_PhyloXML.py
./Bio/GFF/GenericTools.py
./Bio/PDB/DSSP.py
./Bio/PDB/ResidueDepth.py
./Bio/PDB/NACCESS.py

tempfile.mktemp() is deprecated since python release 2.3
https://github.com/biopython/biopython

And even python 2.3 support had been dropped by biopython :-)

best
hongbo


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