[Biopython-dev] [Bug 3175] Caret in genbank files leads to GenBank Parser crash in Biopython 1.54

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Feb 4 17:25:18 UTC 2011


------- Comment #3 from aaron.tin.long.lun at gmail.com  2011-02-04 12:25 EST -------
Hi Peter,
Thanks for the quick reply. I originally encountered the caret in the GenBank
entry for the chromosome II assembly of the human genome (accession number
NT_022221.13, downloaded from NCBI's FTP site yesterday); it can be found at
the very end of the annotation, for the V_segments/CDS of the IGKV2-40 gene
e.g.      CDS  complement(<68451760..68452072^68452073). I suspect that it is
rare, because I parsed through the complete sequences of 15 other chromosomes
before my program crashed. Hope that helps.

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