[Biopython-dev] SeqIO Abi Parser

Peter Cock p.j.a.cock at googlemail.com
Tue Aug 2 18:03:24 UTC 2011


On Tue, Aug 2, 2011 at 6:57 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Tue, Aug 2, 2011 at 5:53 PM, Wibowo Arindrarto
> <w.arindrarto at gmail.com> wrote:
>> Hi Peter,
>> I noticed that bug was because I did not add the _bytes_to_string()
>> converter for a data type. I already fixed this with my latest push, adding
>> the appropriate if clause at AbiIO.py:293-294.
>> Regards,
>
> Was that only half the fix? This made it work for me:
>
> https://github.com/peterjc/biopython/commit/8fc1e141173a735740f91a1338a3fbb747fa2a45
>
> and:
>
> https://github.com/peterjc/biopython/commit/a44e206e482ca5904b395aaca3576a232769ce2e
>
> Peter
>

Could you test this branch, which I think is ready to be merged to the
trunk now:

https://github.com/peterjc/biopython/tree/seqio-abi

Thanks,

Peter



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