[Biopython-dev] [Biopython - Feature #3216] (New) Bio.Phylo.Applications support for PhyML

[redmine at redmine.open-bio.org]

Issue #3216 has been reported by Eric Talevich.

----------------------------------------
Feature #3216: Bio.Phylo.Applications support for PhyML
https://redmine.open-bio.org/issues/3216

Author: Eric Talevich
Status: New
Priority: Low
Assignee: Eric Talevich
Category: Main Distribution
Target version: Not Applicable
URL: http://www.atgc-montpellier.fr/phyml/


PhyML is another popular tool for inferring phylogenies by maximum likelihood, and can be also be considered reasonably best-practice (alongside RAxML, which isn't yet packaged). The Debian package for PhyML was recently updated to the latest version (3.0), and should be trickling down to the distros soon.

Let's create a wrapper for it in Biopython. The input is just a Phylip alignment, so this should be easier than MrBayes.


----------------------------------------
You have received this notification because this email was added to the New Issue Alert plugin


-- 
You have received this notification because you have either subscribed to it, or are involved in it.
To change your notification preferences, please click here and login: http://redmine.open-bio.org