[Biopython-dev] [Biopython - Bug #3009] (Closed) Check the FASTA m10 alignment parser works with FASTA36

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Issue #3009 has been updated by Peter Cock.

Status changed from New to Closed
% Done changed from 0 to 100

Seemed to have been working fine up to and including fasta-36.2, I just found and fixed a problem with fasta-36.3

https://github.com/biopython/biopython/commit/f528bf583993efd7558173dff4309cf0821203a1
https://github.com/biopython/biopython/commit/f8373400a9dbe2cf54f5d0e73ccd5163e7ad4558

Marking this bug as fixed.
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Bug #3009: Check the FASTA m10 alignment parser works with FASTA36
https://redmine.open-bio.org/issues/3009

Author: Peter Cock
Status: Closed
Priority: Normal
Assignee: Biopython Dev Mailing List
Category: Unit Tests
Target version: Not Applicable
URL: 


Bill Pearson has just announced the release of FASTA36:
http://faculty.virginia.edu/wrpearson/fasta/fasta36/

>From his email,
> This version is a major update from FASTA version 35.
> It's main new feature is the ability to report all
> statistically significant alignments between a query
> and library sequence (equivalent to BLAST's multiple
> HSPs).  All previous versions of the FASTA program
> reported only the best alignment between the query
> and library sequence, a serious shortcoming when
> comparing a query protein to a multi-exon gene or
> multi-domain protein.

We need to check the FASTA36 -m 10 output, add this to
our unit tests, and update our parser as required.


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