[Biopython-dev] 9/16 biopython Questions - BioStar

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// How can I automate BLAST of >1 sequence and output the top hits for each input?
// September 15, 2010 at 12:02 PM

http://biostar.stackexchange.com/questions/2488/how-can-i-automate-blast-of-1-sequence-and-output-the-top-hits-for-each-input
I'm looking for a way to do BLAST simultaneously with >1 sequence. The input is several fasta files or one file containing several sequence formatted in fasta. For an initial testing, I want to try obtaining the top 10 blast results for each input sequence and output them to a text file (one text file for each input sequence, or one big file containing all). But currently, I'm drawing a blank. Is there a way to do this with (preferably) biopython?


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