[Biopython-dev] Test python 2.6

Dragoslav Zaric zaricdragoslav at gmail.com
Tue Oct 26 16:45:37 UTC 2010

I run now 2to3 on biopython folder and when it finish I will run run_tests.py
This will also test C modules ?

Kind regards

On Tue, Oct 26, 2010 at 8:41 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> On Tue, Oct 26, 2010 at 5:28 PM, Dragoslav Zaric
> <zaricdragoslav at gmail.com> wrote:
>> Dear Peter,
>> I run
>> python run_tests.py in Tests folder with python 2.6.2 I got one error
>> in test file test_SeqIO_online.py
>> I open the file and went to line that caused error and it looks like
>> it is not functional error, it is just data error, because there is no data
>> for in database for supplied parameters:
>> ("genome", ["fasta", "gb"], "X52960", 248, "Ktxz0HgMlhQmrKTuZpOxPZJ6zGU")
>> So I commented this line and leave other two and all tests passed after this.
> I'd noticed that failing a little while back, and had assumed it was just a
> temporary network problem. In fact looks like the NCBI have changed
> how searching against the genome database works. This update fixes
> the test on Python 2.6:
> http://github.com/biopython/biopython/commit/ad1dd31828c1488c72bffba3bc769c012439ea90
>> Anyway, now I am installing python 3.1.2 and will run tests when
>> finish installation.
> Note there are some known failures on Python 3, this includes
> test_SeqIO_online.py (bytes vs unicode).
> Peter

Dragoslav Zaric

Professional Programmer
MSc Astrophysics

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