[Biopython-dev] [Bug 2681] BioSQL: record annotations enhancements

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2681





------- Comment #9 from biopython-bugzilla at maubp.freeserve.co.uk  2010-10-05 05:16 EST -------
(In reply to comment #4)
> (In reply to comment #2)
> > (In reply to comment #0)
> > > 1) Fixed date/dates typo.
> > 
> > Why is it a typo?  Change not checked in.
> 
> The function _load_bioentry_date in Loader.py inserts the annotation 'date',
> if present, or the current date if not, into the bioentry_qualifier_value
> table. This is pulled by BioSeq.py _retrieve_qualifier_value and stored as
> the attribute 'dates'. Hence I considered line 307 in BioSeq.py to be a typo,
> which should be 'date' and not 'dates'. Also, because Loader.py handles dates
> separately, they should not be handled by the function load_annotations.

I'd forgotten about this issue - I was just reminded by a query on the
Plone4Bio mailing list. Yes, I think you are right:

http://github.com/biopython/biopython/commit/6aca2c0dbc17a172e76483d925248184080bb654

Thanks!


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.